Scalable Parallelization of Ab Initio Molecular Dynamics
PPL Technical Report 2003
Publication Type: Paper
Repository URL: cpaimd-sc2004
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Abstract
Many important problems in material science, chemistry, solid-state
physics, and biophysics require a modeling approach based on
fundamental quantum mechanical principles. A particular approach
that has proved to be relatively efficient and useful is {\em
Car-Parrinello ab initio molecular dynamics} (CPAIMD).
Parallelization of this approach beyond a few hundred processors is
challenging, due to the complex dependencies among various
subcomputations, which lead to complex communication optimization
and load balancing problems. We present a scalable parallelization
of CPAIMD using. The computation is modeled using a large number of
virtual processors, which are mapped flexibly to available
processors with assistance from the runtime system. We present
results for a benchmark with 32 water molecules (128 states)
scaling to more than 1000 processors, setting a precedent for this
problem.
TextRef
Ramkumar Vadali and L. V. Kale and Glenn Martyna and Mark Tuckerman,
"Scalable Parallelization of Ab Initio Molecular Dynamics",
UIUC, Dept. of Computer Science, 2003.
People
- Ramkumar Vadali
- Laxmikant Kale
- Glenn Martyna
- Mark Tuckerman
Research Areas