FEM_Mesh Class Reference
[ParFUM Unstructured Mesh Framework]

A FEM_Mesh is a collection of entities. More...

#include <fem_mesh.h>

Inheritance diagram for FEM_Mesh:

Collaboration diagram for FEM_Mesh:


Public Member Functions
void	setFemMeshModify (femMeshModify *m)
	FEM_Mesh ()
void	pup (PUP::er &p)
	~FEM_Mesh ()
void	setSymList (const FEM_Sym_List &src)
	The symmetries that apply to this mesh:.
const FEM_Sym_List &	getSymList (void) const
void	copyShape (const FEM_Mesh &src)
	Set up the "shape" of our fields-- the number of element types, the datatypes for user data, etc--based on this mesh.
femMeshModify *	getfmMM ()
FEM_Entity &	setCount (int elTypeOrMinusOne)
const FEM_Entity &	getCount (int elTypeOrMinusOne) const
FEM_Elem &	setElem (int elType)
const FEM_Elem &	getElem (int elType) const
int	chkET (int elType) const
FEM_Entity *	lookup (int entity, const char *caller)
	Look up this FEM_Entity type in this mesh, or abort if it's not valid.
const FEM_Entity *	lookup (int entity, const char *caller) const
bool	isSetting (void) const
	Set/get direction control:.
void	becomeSetting (void)
void	becomeGetting (void)
int	nElems () const
int	nElems (int t) const
	Return the total number of elements before type t.
int	getGlobalElem (int elType, int elNo) const
	Return the "global" number of element elNo of type elType.
void	setAscendingGlobalno (void)
	Set our global numbers as 0...n-1 for nodes, elements, and sparse.
void	setAbsoluteGlobalno ()
	The global numbers for elements runs across different types.
void	copyOldGlobalno (const FEM_Mesh &m)
void	print (int idxBase)
int	getEntities (int *entites)
	Extract a list of our entities:.
void	createNodeElemAdj ()
void	createNodeNodeAdj ()
void	createElemElemAdj ()
FEM_ElemAdj_Layer *	getElemAdjLayer (void)
void	e2e_getAll (int e, int *neighborss, int etype=0)
	Place all of element e's adjacent elements in neighbors; assumes neighbors allocated to correct size.
int	e2e_getNbr (int e, short idx, int etype=0)
	Given id of element e, return the id of the idx-th adjacent element.
int	e2e_getIndex (int e, int nbr, int etype=0)
	Given id of element e and id of another element nbr, return i such that nbr is the i-th element adjacent to e.
void	e2e_setAll (int e, int *neighbors, int etype=0)
	Set the element adjacencies of element e to neighbors; assumes neighbors has the correct size.
void	e2e_setIndex (int e, short idx, int newElem, int etype=0)
	Set the idx-th element adjacent to e to be newElem.
void	e2e_replace (int e, int oldNbr, int newNbr, int etype=0)
	Find element oldNbr in e's adjacent elements and replace with newNbr.
void	e2e_removeAll (int e, int etype=0)
	Remove all neighboring elements in adjacency.
void	e2n_getAll (int e, int *adjnodes, int etype=0)
	Place all of element e's adjacent nodes in adjnodes; assumes adjnodes allocated to correct size.
int	e2n_getNode (int e, short idx, int etype=0)
	Given id of element e, return the id of the idx-th adjacent node.
short	e2n_getIndex (int e, int n, int etype=0)
	Given id of element e and id of a node n, return i such that n is the i-th node adjacent to e.
void	e2n_setAll (int e, int *adjnodes, int etype=0)
	Set the node adjacencies of element e to adjnodes; assumes adjnodes has the correct size.
void	e2n_setIndex (int e, short idx, int newNode, int etype=0)
	Set the idx-th node adjacent to e to be newNode.
void	e2n_replace (int e, int oldNode, int newNode, int etype=0)
	Find node oldNode in e's adjacent ndoes and replace with newNode.
void	e2n_removeAll (int e, int etype=0)
	Replace all entries with -1.
void	n2n_getAll (int n, int *adjnodes, int sz)
	Place all of node n's adjacent nodes in adjnodes and the resulting length of adjnodes in sz; assumes adjnodes is not allocated, but sz is.
void	n2n_add (int n, int newNode)
	Adds newNode to node n's node adjacency list.
void	n2n_remove (int n, int oldNode)
	Removes oldNode from n's node adjacency list.
void	n2n_replace (int n, int oldNode, int newNode)
	Finds oldNode in n's node adjacency list, and replaces it with newNode.
void	n2n_removeAll (int n)
	Remove all nodes from n's node adjacency list.
int	n2n_exists (int n, int queryNode)
	Is queryNode in node n's adjacency vector?
void	n2e_getAll (int n, int *adjelements, int sz)
	Place all of node n's adjacent elements in adjelements and the resulting length of adjelements in sz; assumes adjelements is not allocated, but sz is.
void	n2e_add (int n, int newElem)
	Adds newElem to node n's element adjacency list.
void	n2e_remove (int n, int oldElem)
	Removes oldElem from n's element adjacency list.
void	n2e_replace (int n, int oldElem, int newElem)
	Finds oldElem in n's element adjacency list, and replaces it with newElem.
void	n2e_removeAll (int n)
	Remove all elements from n's element adjacency list.
int	getElementOnEdge (int n1, int n2)
	Get an element on edge (n1, n2) where n1, n2 are chunk-local node numberings and result is chunk-local element; return -1 in case of failure.
void	get2ElementsOnEdge (int n1, int n2, int result_e1, int result_e2)
	Get two elements adjacent to both n1 and n2.
void	setFemMeshModify (femMeshModify *m)
void	setParfumSA (ParFUMShadowArray *m)
	FEM_Mesh ()
void	pup (PUP::er &p)
	~FEM_Mesh ()
void	setSymList (const FEM_Sym_List &src)
	The symmetries that apply to this mesh:.
const FEM_Sym_List &	getSymList (void) const
void	copyShape (const FEM_Mesh &src)
	Set up the "shape" of our fields-- the number of element types, the datatypes for user data, etc--based on this mesh.
femMeshModify *	getfmMM ()
FEM_Entity &	setCount (int elTypeOrMinusOne)
const FEM_Entity &	getCount (int elTypeOrMinusOne) const
FEM_Elem &	setElem (int elType)
const FEM_Elem &	getElem (int elType) const
int	chkET (int elType) const
FEM_Entity *	lookup (int entity, const char *caller)
	Look up this FEM_Entity type in this mesh, or abort if it's not valid.
const FEM_Entity *	lookup (int entity, const char *caller) const
bool	isSetting (void) const
	Set/get direction control:.
void	becomeSetting (void)
void	becomeGetting (void)
int	nElems () const
int	nElems (int t) const
	Return the total number of elements before type t.
int	getGlobalElem (int elType, int elNo) const
	Return the "global" number of element elNo of type elType.
void	setAscendingGlobalno (void)
	Set our global numbers as 0...n-1 for nodes, elements, and sparse.
void	setAbsoluteGlobalno ()
	The global numbers for elements runs across different types.
void	copyOldGlobalno (const FEM_Mesh &m)
void	print (int idxBase)
int	getEntities (int *entites)
	Extract a list of our entities:.
void	clearSharedNodes ()
	clearing the idxl and data for shared nodes and ghost nodes and shared elements
void	clearGhostNodes ()
void	clearGhostElems ()
void	createNodeElemAdj ()
void	createNodeNodeAdj ()
void	createElemElemAdj ()
FEM_ElemAdj_Layer *	getElemAdjLayer (void)
void	e2e_getAll (int e, int *neighborss, int etype=0)
	Place all of element e's adjacent elements in neighbors; assumes neighbors allocated to correct size.
int	e2e_getNbr (int e, short idx, int etype=0)
	Given id of element e, return the id of the idx-th adjacent element.
int	e2e_getIndex (int e, int nbr, int etype=0)
	Given id of element e and id of another element nbr, return i such that nbr is the i-th element adjacent to e.
ElemID	e2e_getElem (int idx, int nbr, int etype=0)
	Same as previous but also returning the element type.
ElemID	e2e_getElem (ElemID elem, int nbr)
	Get an element adjacent to elem across its nbr'th face.
ElemID	e2e_getElem (ElemID *elem, int nbr)
	Same as above.
void	e2e_setAll (int e, int *neighbors, int etype=0)
	Set the element adjacencies of element e to neighbors; assumes neighbors has the correct size.
void	e2e_setIndex (int e, short idx, int newElem, int etype=0)
	Set the idx-th element adjacent to e to be newElem.
void	e2e_replace (int e, int oldNbr, int newNbr, int etype=0)
	Find element oldNbr in e's adjacent elements and replace with newNbr.
void	e2e_replace (ElemID e, ElemID oldNbr, ElemID newNbr)
	Find element oldNbr in e's adjacent elements and replace with newNbr.
void	e2e_removeAll (int e, int etype=0)
	Remove all neighboring elements in adjacency.
void	e2e_printAll (ElemID e)
void	e2n_getAll (int e, int *adjnodes, int etype=0)
	Place all of element e's adjacent nodes in adjnodes; assumes adjnodes allocated to correct size.
int	e2n_getNode (int e, short idx, int etype=0)
	Given id of element e, return the id of the idx-th adjacent node.
short	e2n_getIndex (int e, int n, int etype=0)
	Given id of element e and id of a node n, return i such that n is the i-th node adjacent to e.
void	e2n_setAll (int e, int *adjnodes, int etype=0)
	Set the node adjacencies of element e to adjnodes; assumes adjnodes has the correct size.
void	e2n_setIndex (int e, short idx, int newNode, int etype=0)
	Set the idx-th node adjacent to e to be newNode.
void	e2n_replace (int e, int oldNode, int newNode, int etype=0)
	Find node oldNode in e's adjacent ndoes and replace with newNode.
void	e2n_removeAll (int e, int etype=0)
	Replace all entries with -1.
int	n2n_getLength (int n)
void	n2n_getAll (int n, int *&adjnodes, int &sz)
	Place all of node n's adjacent nodes in adjnodes and the resulting length of adjnodes in sz; assumes adjnodes is not allocated, but sz is.
void	n2n_add (int n, int newNode)
	Adds newNode to node n's node adjacency list.
void	n2n_remove (int n, int oldNode)
	Removes oldNode from n's node adjacency list.
void	n2n_replace (int n, int oldNode, int newNode)
	Finds oldNode in n's node adjacency list, and replaces it with newNode.
void	n2n_removeAll (int n)
	Remove all nodes from n's node adjacency list.
int	n2n_exists (int n, int queryNode)
	Is queryNode in node n's adjacency vector?
int	n2e_getLength (int n)
void	n2e_getAll (int n, int *&adjelements, int &sz)
	Place all of node n's adjacent elements in adjelements and the resulting length of adjelements in sz; assumes adjelements is not allocated, but sz is.
const CkVec< ElemID > &	n2e_getAll (int n)
	Return a reference to the structure holding all the elements adjacent to a node.
ElemID	n2e_getElem (int n, int whichAdjElem)
	Get one of node n's adjacent elements.
void	n2e_add (int n, int newElem)
	Adds newElem to node n's element adjacency list.
void	n2e_remove (int n, int oldElem)
	Removes oldElem from n's element adjacency list.
void	n2e_replace (int n, int oldElem, int newElem)
	Finds oldElem in n's element adjacency list, and replaces it with newElem.
void	n2e_removeAll (int n)
	Remove all elements from n's element adjacency list.
int	getElementOnEdge (int n1, int n2)
	Get an element on edge (n1, n2) where n1, n2 are chunk-local node numberings and result is chunk-local element; return -1 in case of failure.
void	get2ElementsOnEdge (int n1, int n2, int result_e1, int result_e2)
	Get two elements adjacent to both n1 and n2.
void	get2ElementsOnEdgeSorted (int n1, int n2, int result_e1, int result_e2)
	Get two elements adjacent to both n1 and n2.
int	countElementsOnEdge (int n1, int n2)
	Count the number of elements adjacent to both n1 and n2.
void	detectFeatures ()
	Detect features of the mesh, storing results in verticesOnBoundary, edgesOnBoundary, cornersOnBoundary.
Data Fields
FEM_Node	node
	The nodes in this mesh:.
FEM_Entity_Types< FEM_Elem >	elem
	The different element types in this mesh:.
FEM_Entity_Types< FEM_Sparse >	sparse
	The different sparse types in this mesh:.
FEM_Userdata_list	udata
	The unassociated user data for this mesh:.
femMeshModify *	fmMM
ParFUMShadowArray *	parfumSA
bool	lastLayerSet
FEM_ElemAdj_Layer *	lastElemAdjLayer
FEM_Entity_Types< FEM_Elem >	elem
	The different element types in this mesh:.
FEM_Entity_Types< FEM_Sparse >	sparse
	The different sparse types in this mesh:.
std::set< std::pair< int, int > >	edgesOnBoundary
	list of edges on the boundary(adjacent to at least one local node)
std::set< int >	verticesOnBoundary
	list of the nodes found in edgesOnBoundary
std::set< int >	cornersOnBoundary
	list of corners on the mesh.
Private Member Functions
void	checkElemType (int elType, const char *caller) const
void	checkSparseType (int uniqueID, const char *caller) const
void	checkElemType (int elType, const char *caller) const
void	checkSparseType (int uniqueID, const char *caller) const
Private Attributes
FEM_Sym_List	symList
	The symmetries in the mesh.
bool	m_isSetting
femMeshModify *	fmMM
FEM_ElemAdj_Layer *	lastElemAdjLayer

Detailed Description

A FEM_Mesh is a collection of entities.

This class describes all the nodes and elements in a finite-element mesh or submesh.

Definition at line 1147 of file fem_mesh.h.

Constructor & Destructor Documentation

FEM_Mesh::FEM_Mesh ( )

Definition at line 1725 of file fem_mesh.C.

References lastElemAdjLayer, and m_isSetting.

FEM_Mesh::~FEM_Mesh ( )

Definition at line 1734 of file fem_mesh.C.

FEM_Mesh::FEM_Mesh ( )

FEM_Mesh::~FEM_Mesh ( )

Member Function Documentation

void FEM_Mesh::checkElemType	(	int	elType,
		const char *	caller
	)			const `[private]`

void FEM_Mesh::checkSparseType	(	int	uniqueID,
		const char *	caller
	)			const `[private]`

void FEM_Mesh::setFemMeshModify ( femMeshModify * m )

Definition at line 1773 of file fem_mesh.C.

References fmMM.

Referenced by femMeshModify::setFemMesh().

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void FEM_Mesh::pup ( PUP::er & p )

Definition at line 1782 of file fem_mesh.C.

References PUP::er::comment(), elem, m_isSetting, FEM_Userdata_list::pup(), FEM_Sym_List::pup(), FEM_Entity_Types< T >::pup(), sparse, symList, and udata.

Referenced by FEM_readMesh(), FEM_writeMesh(), and MeshElem::pup().

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void FEM_Mesh::setSymList ( const FEM_Sym_List & src ) [inline]

The symmetries that apply to this mesh:.

Definition at line 1178 of file fem_mesh.h.

Referenced by copyShape(), and FEM_Mesh_split().

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const FEM_Sym_List& FEM_Mesh::getSymList ( void ) const [inline]

Definition at line 1179 of file fem_mesh.h.

Referenced by copyShape(), and FEM_Sym_coordinates().

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void FEM_Mesh::copyShape ( const FEM_Mesh & src )

Set up the "shape" of our fields-- the number of element types, the datatypes for user data, etc--based on this mesh.

Definition at line 1883 of file fem_mesh.C.

References elem, FEM_Entity_Types< T >::get(), getSymList(), FEM_Entity_Types< T >::has(), node, PUP::s, FEM_Entity_Types< T >::set(), setSymList(), FEM_Entity_Types< T >::size(), and sparse.

Referenced by FEM_break_mesh(), FEM_Mesh_assemble(), MeshElem::operator+=(), MeshElem::operator=(), and splitter::splitter().

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femMeshModify * FEM_Mesh::getfmMM ( )

Definition at line 1778 of file fem_mesh.C.

References fmMM.

Referenced by FEM_ADAPT_AdaptMesh(), FEM_ADAPT_Coarsen(), FEM_ADAPT_GradateMesh(), FEM_ADAPT_Init(), FEM_ADAPT_Refine(), FEM_ADAPT_SetReferenceMesh(), FEM_ADAPT_SimpleCoarsenMesh(), FEM_ADAPT_SimpleRefineMesh(), FEM_ADAPT_TestMesh(), FEM_add_element(), FEM_add_element_local(), FEM_add_node(), FEM_add_node_local(), FEM_add_shared_node_remote(), FEM_Ghost_Essential_attributes(), FEM_Modify_correctLockN(), FEM_Modify_Lock(), FEM_Modify_LockAll(), FEM_Modify_LockN(), FEM_Modify_LockUpdate(), FEM_Modify_Unlock(), FEM_Modify_UnlockN(), FEM_Print_e2e(), FEM_Print_e2n(), FEM_Print_n2e(), FEM_Print_n2n(), FEM_purge_element(), FEM_remove_element(), FEM_remove_element_local(), FEM_remove_node(), FEM_remove_node_local(), FEM_Entity::get_next_invalid(), FEM_MUtil::getLockOwner(), is_shared(), femMeshModify::shouldLoseGhost(), and FEM_MUtil::splitEntityRemote().

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FEM_Entity& FEM_Mesh::setCount ( int elTypeOrMinusOne ) [inline]

Definition at line 1189 of file fem_mesh.h.

References elem.

const FEM_Entity& FEM_Mesh::getCount ( int elTypeOrMinusOne ) const [inline]

Definition at line 1193 of file fem_mesh.h.

References elem.

Referenced by FEM_chunk::exchangeGhostLists(), FEMchunk::exchangeGhostLists(), and FEM_Sym_coordinates().

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FEM_Elem& FEM_Mesh::setElem ( int elType ) [inline]

Definition at line 1197 of file fem_mesh.h.

References elem.

const FEM_Elem& FEM_Mesh::getElem ( int elType ) const [inline]

Definition at line 1198 of file fem_mesh.h.

References elem.

Referenced by ParFUMShadowArray::collectLocalNodes().

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int FEM_Mesh::chkET ( int elType ) const

Definition at line 1806 of file fem_mesh.C.

References elem, and FEM_Entity_Types< T >::size().

Referenced by FEM_Ghost_Stencil::check().

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FEM_Entity * FEM_Mesh::lookup	(	int	entity,
		const char *	caller
	)

Look up this FEM_Entity type in this mesh, or abort if it's not valid.

Definition at line 1737 of file fem_mesh.C.

References elem, FEM_Abort(), FEM_Entity::getGhost(), FEM_Entity_Types< T >::set(), and sparse.

Referenced by CreateAdaptAdjacencies(), createElemElemAdj(), e2e_getAll(), e2e_getIndex(), e2e_getNbr(), e2e_removeAll(), e2e_replace(), e2e_setAll(), e2e_setIndex(), e2n_getAll(), e2n_getIndex(), e2n_getNode(), e2n_removeAll(), e2n_replace(), e2n_setAll(), e2n_setIndex(), FEM_Mesh_allocate_valid_attr(), FEM_Mesh_data_layoutP(), FORTRAN_AS_C(), BulkAdapt::local_split_3D(), lookupAdaptAdjacencies(), lookupEdgeAdaptAdjacencies(), FEM_Adapt::newElement(), chunk::validCheck(), and FEM_Adapt::validDataFor().

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const FEM_Entity * FEM_Mesh::lookup	(	int	entity,
		const char *	caller
	)			const

FIXME: the const version is quite similar to the above, but it should *not* create new Entity types...

Definition at line 1767 of file fem_mesh.C.

References FEM_Entity::lookup().

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bool FEM_Mesh::isSetting ( void ) const [inline]

Set/get direction control:.

Definition at line 1206 of file fem_mesh.h.

Referenced by FEM_Mesh_data_layoutP().

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void FEM_Mesh::becomeSetting ( void ) [inline]

Definition at line 1207 of file fem_mesh.h.

Referenced by FEM_Mesh_allocate().

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void FEM_Mesh::becomeGetting ( void ) [inline]

Definition at line 1208 of file fem_mesh.h.

Referenced by splitter::createMesh(), FEM_master_parallel_part(), FEM_Mesh_assemble(), FEM_readMesh(), and FEM_slave_parallel_part().

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int FEM_Mesh::nElems ( ) const [inline]

Definition at line 1210 of file fem_mesh.h.

References elem.

Referenced by splitter::buildCommLists(), check(), BulkAdapt::edge_bisect_2D(), FEM_Add_ghost_stencil(), FEM_master_parallel_part(), FEM_Mesh_broadcast(), FEM_Mesh_partition(), FEM_Mesh_split(), FEM_slave_parallel_part(), getGlobalElem(), FEM_Partition::getPartition(), makeGhost(), MeshElem::operator+=(), and setAbsoluteGlobalno().

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int FEM_Mesh::nElems ( int t ) const

Return the total number of elements before type t.

Definition at line 1814 of file fem_mesh.C.

References elem, FEM_Entity_Types< T >::get(), FEM_Entity_Types< T >::has(), and FEM_Entity_Types< T >::size().

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int FEM_Mesh::getGlobalElem	(	int	elType,
		int	elNo
	)			const

Return the "global" number of element elNo of type elType.

Definition at line 1831 of file fem_mesh.C.

References elem, nElems(), and size.

Referenced by splitter::copySparseChunks().

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void FEM_Mesh::setAscendingGlobalno ( void )

Set our global numbers as 0...n-1 for nodes, elements, and sparse.

Definition at line 1845 of file fem_mesh.C.

References elem, FEM_Entity_Types< T >::has(), PUP::s, FEM_Entity_Types< T >::size(), and sparse.

Referenced by FEM_Mesh_partition(), and setAbsoluteGlobalno().

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void FEM_Mesh::setAbsoluteGlobalno ( )

The global numbers for elements runs across different types.

Definition at line 1852 of file fem_mesh.C.

References elem, FEM_Entity_Types< T >::has(), nElems(), setAscendingGlobalno(), and FEM_Entity_Types< T >::size().

Referenced by FEM_master_parallel_part().

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void FEM_Mesh::copyOldGlobalno ( const FEM_Mesh & m )

Definition at line 1859 of file fem_mesh.C.

References elem, FEM_Entity_Types< T >::has(), node, PUP::s, FEM_Entity_Types< T >::size(), and sparse.

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int FEM_Mesh::getEntities ( int * entites )

Extract a list of our entities:.

Definition at line 1896 of file fem_mesh.C.

References elem, FEM_Entity_Types< T >::has(), PUP::s, FEM_Entity_Types< T >::size(), and sparse.

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void FEM_Mesh::createNodeElemAdj ( )

Definition at line 314 of file fem_mesh_adjacency.C.

References CmiMemoryCheck(), elem, and FEM_Entity_Types< T >::size().

Referenced by FORTRAN_AS_C().

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void FEM_Mesh::createNodeNodeAdj ( )

Definition at line 324 of file fem_mesh_adjacency.C.

References CmiMemoryCheck(), elem, and FEM_Entity_Types< T >::size().

Referenced by FORTRAN_AS_C().

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void FEM_Mesh::createElemElemAdj ( )

Definition at line 380 of file fem_mesh_adjacency.C.

References PUP::a, tupleTable::addTuple(), PUP::b, tupleTable::beginLookup(), CmiMemoryCheck(), conn, FEM_ElemAdj_Layer::elem, elem, BasicTable2d< T >::getData(), getElemAdjLayer(), FEM_Entity_Types< T >::has(), FEM_ElemAdj_Layer::initialized, PUP::l, lookup(), tupleTable::lookupNext(), tupleTable::MAX_TUPLE, n, elemList::next, FEM_ElemAdj_Layer::nodesPerTuple, FEM_Entity_Types< T >::size(), PUP::t, and PUP::u.

Referenced by FORTRAN_AS_C().

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FEM_ElemAdj_Layer * FEM_Mesh::getElemAdjLayer ( void )

Definition at line 341 of file fem_mesh_adjacency.C.

References lastElemAdjLayer.

Referenced by createElemElemAdj(), FEM_Add_elem2face_tuples(), and update_new_element_e2e().

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void FEM_Mesh::e2e_getAll	(	int	e,
		int *	neighborss,
		int	etype = `0`
	)

Place all of element e's adjacent elements in neighbors; assumes neighbors allocated to correct size.

Definition at line 542 of file fem_mesh_adjacency.C.

References CmiMemoryCheck(), elem, FEM_Entity_Types< T >::get(), lookup(), and BasicTable2d< T >::width().

Referenced by FEM_AdaptL::edge_contraction_help(), FEM_add_element_local(), FEM_MUtil::FEM_Print_e2e(), and FEM_remove_element_local().

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int FEM_Mesh::e2e_getNbr	(	int	e,
		short	idx,
		int	etype = `0`
	)

Given id of element e, return the id of the idx-th adjacent element.

Given id of element e of type etype, return the id of the idx-th adjacent element.

Definition at line 569 of file fem_mesh_adjacency.C.

References CmiMemoryCheck(), elem, FEM_Entity_Types< T >::get(), and lookup().

Referenced by FEM_Adapt::adj_traverse(), FEM_Adapt_Algs::Coarsen(), FEM_Adapt::edge_contraction(), FEM_Adapt::edge_contraction_help(), FEM_Adapt::edge_flip_help(), FEM_Adapt::findAdjData(), Bulk_Adapt::flipOrBisect(), FEM_Adapt_Algs::flipOrBisect(), FEM_Adapt_Algs::refine_element_leb(), FEM_Adapt::vertex_remove_help(), FEM_Adapt::vertex_split(), and FEM_Adapt::vertex_split_help().

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int FEM_Mesh::e2e_getIndex	(	int	e,
		int	nbr,
		int	etype = `0`
	)

Given id of element e and id of another element nbr, return i such that nbr is the i-th element adjacent to e.

Definition at line 593 of file fem_mesh_adjacency.C.

References CmiMemoryCheck(), elem, FEM_Entity_Types< T >::get(), lookup(), and BasicTable2d< T >::width().

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void FEM_Mesh::e2e_setAll	(	int	e,
		int *	neighbors,
		int	etype = `0`
	)

Set the element adjacencies of element e to neighbors; assumes neighbors has the correct size.

Definition at line 626 of file fem_mesh_adjacency.C.

References CmiMemoryCheck(), elem, FEM_Entity_Types< T >::get(), lookup(), and BasicTable2d< T >::width().

Referenced by FEM_Adapt::localEdgeBisect(), and FEM_Adapt::vertex_split().

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void FEM_Mesh::e2e_setIndex	(	int	e,
		short	idx,
		int	newElem,
		int	etype = `0`
	)

Set the idx-th element adjacent to e to be newElem.

Definition at line 658 of file fem_mesh_adjacency.C.

References CmiMemoryCheck(), elem, FEM_Entity_Types< T >::get(), and lookup().

Referenced by FEM_Adapt::edge_flip_help().

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void FEM_Mesh::e2e_replace	(	int	e,
		int	oldNbr,
		int	newNbr,
		int	etype = `0`
	)

Find element oldNbr in e's adjacent elements and replace with newNbr.

Definition at line 681 of file fem_mesh_adjacency.C.

References CmiMemoryCheck(), elem, FEM_Entity_Types< T >::get(), lookup(), and BasicTable2d< T >::width().

Referenced by FEM_Adapt::edge_bisect_help(), FEM_Adapt::edge_contraction_help(), FEM_Adapt::edge_flip_help(), FEM_remove_element_local(), FEM_Adapt::localEdgeBisect(), FEM_Adapt::vertex_remove_help(), and FEM_Adapt::vertex_split().

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void FEM_Mesh::e2e_removeAll	(	int	e,
		int	etype = `0`
	)

Remove all neighboring elements in adjacency.

Definition at line 714 of file fem_mesh_adjacency.C.

References CmiMemoryCheck(), elem, FEM_Entity_Types< T >::get(), lookup(), and BasicTable2d< T >::width().

Referenced by FEM_Adapt::deleteElement(), and FEM_add_element_local().

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void FEM_Mesh::e2n_getAll	(	int	e,
		int *	adjnodes,
		int	etype = `0`
	)

Place all of element e's adjacent nodes in adjnodes; assumes adjnodes allocated to correct size.

Definition at line 743 of file fem_mesh_adjacency.C.

References CmiMemoryCheck(), conn, elem, lookup(), and BasicTable2d< T >::width().

Referenced by FEM_MUtil::addToSharedList(), FEM_MUtil::AreaTest(), FEM_Adapt_Algs::Coarsen(), FEM_Adapt::e2n_getNot(), FEM_MUtil::eatIntoElement(), femMeshModify::eatIntoElement(), FEM_AdaptL::edge_contraction(), FEM_AdaptL::edge_contraction_help(), FEM_MUtil::FEM_Print_e2n(), FEM_remove_element(), FEM_remove_element_local(), Bulk_Adapt::flipOrBisect(), FEM_Adapt_Algs::flipOrBisect(), Bulk_Adapt::getAreaQuality(), FEM_Adapt_Algs::getAreaQuality(), Bulk_Adapt::ParFUM_SetReferenceMesh(), FEM_Adapt_Algs::Refine(), FEM_Adapt_Algs::refine_element_leb(), Bulk_Adapt::SetMeshSize(), FEM_Adapt_Algs::SetMeshSize(), FEM_Adapt_Algs::SetReferenceMesh(), FEM_Adapt_Algs::simple_coarsen(), FEM_Adapt_Algs::simple_refine(), FEM_MUtil::StructureTest(), update_new_element_e2e(), and femMeshModify::willItLose().

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int FEM_Mesh::e2n_getNode	(	int	e,
		short	idx,
		int	etype = `0`
	)

Given id of element e, return the id of the idx-th adjacent node.

Definition at line 769 of file fem_mesh_adjacency.C.

References CmiMemoryCheck(), conn, elem, and lookup().

Referenced by FEM_Adapt::adj_traverse(), FEM_Adapt::edge_contraction_help(), FEM_Adapt::edge_flip_help(), FEM_Adapt::findAdjData(), FEM_Adapt::vertex_remove_help(), and FEM_Adapt::vertex_split_help().

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short FEM_Mesh::e2n_getIndex	(	int	e,
		int	n,
		int	etype = `0`
	)

Given id of element e and id of a node n, return i such that n is the i-th node adjacent to e.

Definition at line 792 of file fem_mesh_adjacency.C.

References CmiMemoryCheck(), conn, elem, lookup(), and BasicTable2d< T >::width().

Referenced by FEM_Adapt_Algs::Coarsen(), and FEM_Adapt::find_local_node_index().

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void FEM_Mesh::e2n_setAll	(	int	e,
		int *	adjnodes,
		int	etype = `0`
	)

Set the node adjacencies of element e to adjnodes; assumes adjnodes has the correct size.

Definition at line 820 of file fem_mesh_adjacency.C.

References CmiMemoryCheck(), conn, elem, lookup(), and BasicTable2d< T >::width().

Referenced by FEM_Adapt::vertex_split().

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void FEM_Mesh::e2n_setIndex	(	int	e,
		short	idx,
		int	newNode,
		int	etype = `0`
	)

Set the idx-th node adjacent to e to be newNode.

Definition at line 846 of file fem_mesh_adjacency.C.

References CmiMemoryCheck(), conn, elem, and lookup().

Referenced by FEM_Adapt::edge_flip_help(), and FEM_Adapt::localEdgeBisect().

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void FEM_Mesh::e2n_replace	(	int	e,
		int	oldNode,
		int	newNode,
		int	etype = `0`
	)

Find node oldNode in e's adjacent ndoes and replace with newNode.

Definition at line 868 of file fem_mesh_adjacency.C.

References CmiMemoryCheck(), conn, elem, lookup(), and BasicTable2d< T >::width().

Referenced by FEM_Adapt::edge_contraction_help(), FEM_remove_element(), FEM_MUtil::Replace_node_local(), FEM_Adapt::vertex_remove_help(), and FEM_Adapt::vertex_split().

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void FEM_Mesh::e2n_removeAll	(	int	e,
		int	etype = `0`
	)

Replace all entries with -1.

Definition at line 899 of file fem_mesh_adjacency.C.

References CmiMemoryCheck(), conn, elem, lookup(), and BasicTable2d< T >::width().

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void FEM_Mesh::n2n_getAll	(	int	n,
		int **	adjnodes,
		int *	sz
	)

Place all of node n's adjacent nodes in adjnodes and the resulting length of adjnodes in sz; assumes adjnodes is not allocated, but sz is.

Definition at line 928 of file fem_mesh_adjacency.C.

References CmiMemoryCheck(), and CkVec< T >::length().

Referenced by FEM_AdaptL::edge_contraction_help(), FEM_Adapt::edge_contraction_help(), FEM_Adapt_Algs::FEM_mesh_smooth(), FEM_MUtil::FEM_Print_n2n(), FEM_remove_element(), FEM_remove_node(), FEM_remove_node_local(), FEM_MUtil::findGhostSend(), FEM_Adapt_Algs::GradateMesh(), FEM_Adapt::isCorner(), Bulk_Adapt::ParFUM_GradateMesh(), FEM_MUtil::removeGhostNodeRemote(), FEM_MUtil::Replace_node_local(), FEM_MUtil::StructureTest(), FEM_AdaptL::vertex_remove(), and FEM_Adapt::vertex_remove_help().

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void FEM_Mesh::n2n_add	(	int	n,
		int	newNode
	)

Adds newNode to node n's node adjacency list.

Definition at line 964 of file fem_mesh_adjacency.C.

References CmiMemoryCheck(), nn, and CkVec< T >::push_back().

Referenced by FEM_Adapt::edge_contraction_help(), FEM_Adapt::edge_flip_help(), FEM_add_element_local(), FEM_remove_element(), FEM_remove_element_local(), FEM_Adapt::localEdgeBisect(), FEM_MUtil::Replace_node_local(), and FEM_Adapt::vertex_split().

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void FEM_Mesh::n2n_remove	(	int	n,
		int	oldNode
	)

Removes oldNode from n's node adjacency list.

Definition at line 993 of file fem_mesh_adjacency.C.

References CmiMemoryCheck(), CkVec< T >::length(), and CkVec< T >::remove().

Referenced by FEM_Adapt::edge_bisect_help(), FEM_Adapt::edge_contraction_help(), FEM_Adapt::edge_flip_help(), FEM_remove_element(), FEM_remove_element_local(), FEM_Adapt::vertex_remove_help(), and FEM_Adapt::vertex_split().

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void FEM_Mesh::n2n_replace	(	int	n,
		int	oldNode,
		int	newNode
	)

Finds oldNode in n's node adjacency list, and replaces it with newNode.

Definition at line 1057 of file fem_mesh_adjacency.C.

References CmiMemoryCheck(), and CkVec< T >::length().

Referenced by FEM_Adapt::edge_contraction_help(), FEM_remove_element(), FEM_Adapt::localEdgeBisect(), FEM_MUtil::Replace_node_local(), and FEM_Adapt::vertex_remove_help().

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void FEM_Mesh::n2n_removeAll ( int n )

Remove all nodes from n's node adjacency list.

Definition at line 1092 of file fem_mesh_adjacency.C.

References CmiMemoryCheck(), and CkVec< T >::free().

Referenced by FEM_Adapt::deleteNode(), FEM_add_node_local(), and FEM_MUtil::Replace_node_local().

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int FEM_Mesh::n2n_exists	(	int	n,
		int	queryNode
	)

Is queryNode in node n's adjacency vector?

Definition at line 1027 of file fem_mesh_adjacency.C.

References CmiMemoryCheck(), and CkVec< T >::length().

Referenced by FEM_add_element_local(), FEM_remove_element_local(), and FEM_Adapt::findAdjData().

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void FEM_Mesh::n2e_getAll	(	int	n,
		int **	adjelements,
		int *	sz
	)

Place all of node n's adjacent elements in adjelements and the resulting length of adjelements in sz; assumes adjelements is not allocated, but sz is.

Definition at line 1119 of file fem_mesh_adjacency.C.

References CmiMemoryCheck(), len, and CkVec< T >::length().

Referenced by FEM_MUtil::addToSharedList(), FEM_AdaptL::edge_contraction_help(), FEM_Adapt::edge_contraction_help(), FEM_MUtil::FEM_Print_n2e(), FEM_remove_element(), FEM_remove_node(), FEM_remove_node_local(), FEM_Adapt::findElementWithNodes(), get2ElementsOnEdge(), getElementOnEdge(), FEM_Adapt::isEdgeBoundary(), n2e_add(), FEM_Adapt::n2e_exists(), n2e_replace(), FEM_MUtil::removeGhostNodeRemote(), FEM_MUtil::Replace_node_local(), femMeshModify::shouldLoseGhost(), FEM_MUtil::StructureTest(), update_new_element_e2e(), and femMeshModify::willItLose().

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void FEM_Mesh::n2e_add	(	int	n,
		int	newElem
	)

Adds newElem to node n's element adjacency list.

Definition at line 1159 of file fem_mesh_adjacency.C.

References CmiMemoryCheck(), elem, ghost(), n2e_getAll(), and CkVec< T >::push_back().

Referenced by FEM_Adapt::edge_contraction_help(), FEM_Adapt::edge_flip_help(), FEM_add_element_local(), FEM_remove_element(), FEM_Adapt::localEdgeBisect(), FEM_MUtil::Replace_node_local(), and FEM_Adapt::vertex_split().

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void FEM_Mesh::n2e_remove	(	int	n,
		int	oldElem
	)

Removes oldElem from n's element adjacency list.

Definition at line 1196 of file fem_mesh_adjacency.C.

References CmiMemoryCheck(), CkVec< T >::length(), and CkVec< T >::remove().

Referenced by FEM_Adapt::edge_contraction_help(), FEM_Adapt::edge_flip_help(), FEM_remove_element(), FEM_remove_element_local(), FEM_Adapt::vertex_remove_help(), and FEM_Adapt::vertex_split().

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void FEM_Mesh::n2e_replace	(	int	n,
		int	oldElem,
		int	newElem
	)

Finds oldElem in n's element adjacency list, and replaces it with newElem.

Definition at line 1230 of file fem_mesh_adjacency.C.

References CmiMemoryCheck(), elem, ghost(), CkVec< T >::length(), and n2e_getAll().

Referenced by FEM_Adapt::localEdgeBisect(), and FEM_Adapt::vertex_remove_help().

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void FEM_Mesh::n2e_removeAll ( int n )

Remove all elements from n's element adjacency list.

Definition at line 1273 of file fem_mesh_adjacency.C.

References CmiMemoryCheck(), and CkVec< T >::free().

Referenced by FEM_Adapt::deleteNode(), FEM_add_node_local(), and FEM_MUtil::Replace_node_local().

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int FEM_Mesh::getElementOnEdge	(	int	n1,
		int	n2
	)

Get an element on edge (n1, n2) where n1, n2 are chunk-local node numberings and result is chunk-local element; return -1 in case of failure.

Get an element on edge (n1, n2) where n1, n2 are chunk-local node numberings; return -1 in case of failure.

Definition at line 1304 of file fem_mesh_adjacency.C.

References CmiMemoryCheck(), and n2e_getAll().

Referenced by FEM_Adapt::edge_contraction(), FEM_Adapt::findAdjData(), and FEM_Adapt::vertex_split().

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void FEM_Mesh::get2ElementsOnEdge	(	int	n1,
		int	n2,
		int *	result_e1,
		int *	result_e2
	)

Get two elements adjacent to both n1 and n2.

Get 2 elements on edge (n1, n2) where n1, n2 are chunk-local node numberings; return the edges in result_e1 and result_e2 No preference is given to ghosts over local elements.

Definition at line 1339 of file fem_mesh_adjacency.C.

References CkExit(), CmiMemoryCheck(), and n2e_getAll().

Referenced by FEM_Mesh_get2ElementsOnEdge(), FEM_Adapt_Algs::GradateMesh(), and Bulk_Adapt::ParFUM_GradateMesh().

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void FEM_Mesh::checkElemType	(	int	elType,
		const char *	caller
	)			const `[private]`

void FEM_Mesh::checkSparseType	(	int	uniqueID,
		const char *	caller
	)			const `[private]`

void FEM_Mesh::setFemMeshModify ( femMeshModify * m )

void FEM_Mesh::setParfumSA ( ParFUMShadowArray * m )

Definition at line 2018 of file mesh.C.

References parfumSA.

Referenced by ParFUMShadowArray::ckJustMigrated(), and ParFUMShadowArray::setFemMesh().

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void FEM_Mesh::pup ( PUP::er & p )

void FEM_Mesh::setSymList ( const FEM_Sym_List & src ) [inline]

The symmetries that apply to this mesh:.

Definition at line 1318 of file ParFUM_internals.h.

const FEM_Sym_List& FEM_Mesh::getSymList ( void ) const [inline]

Definition at line 1319 of file ParFUM_internals.h.

void FEM_Mesh::copyShape ( const FEM_Mesh & src )

Set up the "shape" of our fields-- the number of element types, the datatypes for user data, etc--based on this mesh.

femMeshModify* FEM_Mesh::getfmMM ( )

FEM_Entity& FEM_Mesh::setCount ( int elTypeOrMinusOne ) [inline]

Definition at line 1329 of file ParFUM_internals.h.

References elem.

const FEM_Entity& FEM_Mesh::getCount ( int elTypeOrMinusOne ) const [inline]

Definition at line 1333 of file ParFUM_internals.h.

References elem.

FEM_Elem& FEM_Mesh::setElem ( int elType ) [inline]

Definition at line 1337 of file ParFUM_internals.h.

References elem.

const FEM_Elem& FEM_Mesh::getElem ( int elType ) const [inline]

Definition at line 1338 of file ParFUM_internals.h.

References elem.

int FEM_Mesh::chkET ( int elType ) const

FEM_Entity* FEM_Mesh::lookup	(	int	entity,
		const char *	caller
	)

Look up this FEM_Entity type in this mesh, or abort if it's not valid.

const FEM_Entity* FEM_Mesh::lookup	(	int	entity,
		const char *	caller
	)			const

bool FEM_Mesh::isSetting ( void ) const [inline]

Set/get direction control:.

Definition at line 1346 of file ParFUM_internals.h.

void FEM_Mesh::becomeSetting ( void ) [inline]

Definition at line 1347 of file ParFUM_internals.h.

void FEM_Mesh::becomeGetting ( void ) [inline]

Definition at line 1348 of file ParFUM_internals.h.

int FEM_Mesh::nElems ( ) const [inline]

Definition at line 1350 of file ParFUM_internals.h.

References elem.

int FEM_Mesh::nElems ( int t ) const

Return the total number of elements before type t.

int FEM_Mesh::getGlobalElem	(	int	elType,
		int	elNo
	)			const

Return the "global" number of element elNo of type elType.

void FEM_Mesh::setAscendingGlobalno ( void )

Set our global numbers as 0...n-1 for nodes, elements, and sparse.

void FEM_Mesh::setAbsoluteGlobalno ( )

The global numbers for elements runs across different types.

void FEM_Mesh::copyOldGlobalno ( const FEM_Mesh & m )

void FEM_Mesh::print ( int idxBase )

int FEM_Mesh::getEntities ( int * entites )

Extract a list of our entities:.

void FEM_Mesh::clearSharedNodes ( )

clearing the idxl and data for shared nodes and ghost nodes and shared elements

Definition at line 2121 of file mesh.C.

Referenced by ParFUM_desharing().

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void FEM_Mesh::clearGhostNodes ( )

Definition at line 2125 of file mesh.C.

Referenced by ParFUM_deghosting().

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void FEM_Mesh::clearGhostElems ( )

Definition at line 2129 of file mesh.C.

References elem, FEM_Entity_Types< T >::has(), and FEM_Entity_Types< T >::size().

Referenced by ParFUM_deghosting().

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void FEM_Mesh::createNodeElemAdj ( )

void FEM_Mesh::createNodeNodeAdj ( )

void FEM_Mesh::createElemElemAdj ( )

FEM_ElemAdj_Layer* FEM_Mesh::getElemAdjLayer ( void )

void FEM_Mesh::e2e_getAll	(	int	e,
		int *	neighborss,
		int	etype = `0`
	)

Place all of element e's adjacent elements in neighbors; assumes neighbors allocated to correct size.

int FEM_Mesh::e2e_getNbr	(	int	e,
		short	idx,
		int	etype = `0`
	)

Given id of element e, return the id of the idx-th adjacent element.

int FEM_Mesh::e2e_getIndex	(	int	e,
		int	nbr,
		int	etype = `0`
	)

Given id of element e and id of another element nbr, return i such that nbr is the i-th element adjacent to e.

ElemID FEM_Mesh::e2e_getElem	(	int	idx,
		int	nbr,
		int	etype = `0`
	)

Same as previous but also returning the element type.

Referenced by meshFacetItr_Begin(), meshFacetItr_GetCurr(), meshFacetItr_Next(), topFacetItr_Begin(), topFacetItr_GetCurr(), and topFacetItr_Next().

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ElemID FEM_Mesh::e2e_getElem	(	ElemID	elem,
		int	nbr
	)

Get an element adjacent to elem across its nbr'th face.

ElemID FEM_Mesh::e2e_getElem	(	ElemID *	elem,
		int	nbr
	)

Same as above.

void FEM_Mesh::e2e_setAll	(	int	e,
		int *	neighbors,
		int	etype = `0`
	)

Set the element adjacencies of element e to neighbors; assumes neighbors has the correct size.

void FEM_Mesh::e2e_setIndex	(	int	e,
		short	idx,
		int	newElem,
		int	etype = `0`
	)

Set the idx-th element adjacent to e to be newElem.

void FEM_Mesh::e2e_replace	(	int	e,
		int	oldNbr,
		int	newNbr,
		int	etype = `0`
	)

Find element oldNbr in e's adjacent elements and replace with newNbr.

void FEM_Mesh::e2e_replace	(	ElemID	e,
		ElemID	oldNbr,
		ElemID	newNbr
	)

Find element oldNbr in e's adjacent elements and replace with newNbr.

void FEM_Mesh::e2e_removeAll	(	int	e,
		int	etype = `0`
	)

Remove all neighboring elements in adjacency.

void FEM_Mesh::e2e_printAll ( ElemID e )

void FEM_Mesh::e2n_getAll	(	int	e,
		int *	adjnodes,
		int	etype = `0`
	)

Place all of element e's adjacent nodes in adjnodes; assumes adjnodes allocated to correct size.

int FEM_Mesh::e2n_getNode	(	int	e,
		short	idx,
		int	etype = `0`
	)

Given id of element e, return the id of the idx-th adjacent node.

short FEM_Mesh::e2n_getIndex	(	int	e,
		int	n,
		int	etype = `0`
	)

Given id of element e and id of a node n, return i such that n is the i-th node adjacent to e.

void FEM_Mesh::e2n_setAll	(	int	e,
		int *	adjnodes,
		int	etype = `0`
	)

Set the node adjacencies of element e to adjnodes; assumes adjnodes has the correct size.

void FEM_Mesh::e2n_setIndex	(	int	e,
		short	idx,
		int	newNode,
		int	etype = `0`
	)

Set the idx-th node adjacent to e to be newNode.

void FEM_Mesh::e2n_replace	(	int	e,
		int	oldNode,
		int	newNode,
		int	etype = `0`
	)

Find node oldNode in e's adjacent ndoes and replace with newNode.

void FEM_Mesh::e2n_removeAll	(	int	e,
		int	etype = `0`
	)

Replace all entries with -1.

int FEM_Mesh::n2n_getLength ( int n )

void FEM_Mesh::n2n_getAll	(	int	n,
		int *&	adjnodes,
		int &	sz
	)

Place all of node n's adjacent nodes in adjnodes and the resulting length of adjnodes in sz; assumes adjnodes is not allocated, but sz is.

void FEM_Mesh::n2n_add	(	int	n,
		int	newNode
	)

Adds newNode to node n's node adjacency list.

void FEM_Mesh::n2n_remove	(	int	n,
		int	oldNode
	)

Removes oldNode from n's node adjacency list.

void FEM_Mesh::n2n_replace	(	int	n,
		int	oldNode,
		int	newNode
	)

Finds oldNode in n's node adjacency list, and replaces it with newNode.

void FEM_Mesh::n2n_removeAll ( int n )

Remove all nodes from n's node adjacency list.

int FEM_Mesh::n2n_exists	(	int	n,
		int	queryNode
	)

Is queryNode in node n's adjacency vector?

int FEM_Mesh::n2e_getLength ( int n )

Referenced by meshModel_CreateNodeElemItr(), and topModel_CreateNodeElemItr().

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void FEM_Mesh::n2e_getAll	(	int	n,
		int *&	adjelements,
		int &	sz
	)

Place all of node n's adjacent elements in adjelements and the resulting length of adjelements in sz; assumes adjelements is not allocated, but sz is.

Ignore element types

const CkVec<ElemID>& FEM_Mesh::n2e_getAll ( int n )

Return a reference to the structure holding all the elements adjacent to a node.

ElemID FEM_Mesh::n2e_getElem	(	int	n,
		int	whichAdjElem
	)

Get one of node n's adjacent elements.

Referenced by meshNodeElemItr_GetCurr(), and topNodeElemItr_GetCurr().

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void FEM_Mesh::n2e_add	(	int	n,
		int	newElem
	)

Adds newElem to node n's element adjacency list.

void FEM_Mesh::n2e_remove	(	int	n,
		int	oldElem
	)

Removes oldElem from n's element adjacency list.

void FEM_Mesh::n2e_replace	(	int	n,
		int	oldElem,
		int	newElem
	)

Finds oldElem in n's element adjacency list, and replaces it with newElem.

void FEM_Mesh::n2e_removeAll ( int n )

Remove all elements from n's element adjacency list.

int FEM_Mesh::getElementOnEdge	(	int	n1,
		int	n2
	)

Get an element on edge (n1, n2) where n1, n2 are chunk-local node numberings and result is chunk-local element; return -1 in case of failure.

void FEM_Mesh::get2ElementsOnEdge	(	int	n1,
		int	n2,
		int *	result_e1,
		int *	result_e2
	)

Get two elements adjacent to both n1 and n2.

void FEM_Mesh::get2ElementsOnEdgeSorted	(	int	n1,
		int	n2,
		int *	result_e1,
		int *	result_e2
	)

Get two elements adjacent to both n1 and n2.

int FEM_Mesh::countElementsOnEdge	(	int	n1,
		int	n2
	)

Count the number of elements adjacent to both n1 and n2.

void FEM_Mesh::detectFeatures ( )

Detect features of the mesh, storing results in verticesOnBoundary, edgesOnBoundary, cornersOnBoundary.

Note:

currently only 2-d triangular meshes(with triangles in FEM_ELEM+0) are supported

We require at least a single node-adjacent ghost layer for this to work correctly

We do not yet pup the structures that store the results, so don't use these with migration yet

Referenced by FEM_Mesh_detect_features().

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Field Documentation

FEM_Sym_List FEM_Mesh::symList [private]

The symmetries in the mesh.

Definition at line 1149 of file fem_mesh.h.

Referenced by pup().

bool FEM_Mesh::m_isSetting [private]

Definition at line 1150 of file fem_mesh.h.

Referenced by FEM_Mesh(), and pup().

femMeshModify* FEM_Mesh::fmMM [private]

Definition at line 1151 of file fem_mesh.h.

Referenced by femMeshModify::ckJustMigrated(), getfmMM(), and setFemMeshModify().

FEM_ElemAdj_Layer* FEM_Mesh::lastElemAdjLayer [private]

Definition at line 1156 of file fem_mesh.h.

Referenced by FEM_Mesh(), and getElemAdjLayer().

FEM_Node FEM_Mesh::node

The nodes in this mesh:.

Definition at line 1166 of file fem_mesh.h.

Referenced by BulkAdapt::add_node(), FEM_MUtil::addElemRemote(), FEM_MUtil::addGhostElementRemote(), splitter::addGhostInner(), splitter::addGhostNode(), splitter::addGhosts(), femMeshModify::addghostsendl(), femMeshModify::addghostsendl1(), femMeshModify::addghostsendr(), femMeshModify::addghostsendr1(), addIDXLists(), femMeshModify::addNodeRemote(), FEM_MUtil::addToSharedList(), femMeshModify::addTransIDXLRemote(), splitter::buildCommLists(), edge::buildLockingCloud(), check(), FEM_Adapt_Algs::Coarsen(), splitter::consistencyCheck(), copyOldGlobalno(), copyShape(), splitter::createMesh(), chunk::deriveEdges(), BulkAdapt::edge_bisect_3D(), FEM_Adapt::edge_bisect_help(), FEM_AdaptL::edge_contraction(), FEM_AdaptL::edge_contraction_help(), FEM_Adapt::edge_flip_help(), FEM_MUtil::exists_in_IDXL(), FEM_add_element(), FEM_add_node(), FEM_add_node_local(), FEM_break_mesh(), FEM_Ghost_Essential_attributes(), FEM_Interpolate::FEM_InterpolateCopyAttributes(), FEM_Interpolate::FEM_InterpolateNodeInElement(), FEM_Interpolate::FEM_InterpolateNodeOnEdge(), FEM_Interpolate::FEM_InterpolateNodeOnFace(), FEM_Make_node_globalno(), FEM_master_parallel_part(), FEM_Mesh_assemble(), FEM_Mesh_partition(), FEM_Modify_LockAll(), FEM_Modify_LockUpdate(), FEM_Print_Mesh_Summary(), FEM_readMesh(), FEM_remove_element(), FEM_remove_node(), FEM_remove_node_local(), FEM_Set_sym_nodes(), FEM_slave_parallel_part(), FEM_write_part2mesh(), FEM_Adapt::findAdjData(), Bulk_Adapt::findEdgeLengths(), FEM_MUtil::findGhostSend(), ParFUMShadowArray::FindIdxlSide(), chunk::fixNode(), edge::flipPrevent(), FTN_NAME(), BulkAdapt::get_idxl_for_node(), BulkAdapt::get_node_from_idxl(), FEM_MUtil::getChunkNos(), FEM_MUtil::getChunksSharingGhostNodeRemote(), FEMchunk::getComm(), Bulk_Adapt::getCoord(), femMeshModify::getIdxGhostSend(), FEM_MUtil::getLockOwner(), FEMchunk::getPrimary(), FEM_Adapt_Algs::GradateMesh(), BulkAdapt::handle_split_3D(), FEM_MUtil::IdxlListTest(), BulkAdapt::is_node_in_idxl(), FEM_MUtil::isShared(), chunk::joinCommLists(), FEM_MUtil::knowsAbtNode(), BulkAdapt::length(), FEM_lock::lock(), ParFUMShadowArray::lockLocalNodes(), FEM_AdaptL::lockNodes(), ParFUMShadowArray::lockRegion(), ParFUMShadowArray::lockSharedIdxls(), FEM_MUtil::lookup_in_IDXL(), BulkAdapt::make_node_shared(), makeGhost(), makeGhosts(), mesh2graph(), meshModel_CreateNodeElemItr(), meshNodeItr_Begin(), meshNodeItr_IsValid(), meshNodeItr_Next(), FEM_Adapt::newNode(), BulkAdapt::one_side_split_2D(), MeshElem::operator+=(), FEM_MUtil::packEntData(), ParFUM_generateGlobalNodeNumbers(), Bulk_Adapt::ParFUM_GradateMesh(), ParFUM_recreateSharedNodes(), ParFUM_SA_Init(), FEM_Adapt_Algs::Refine(), Bulk_Adapt::Refine_h(), BulkAdapt::remote_edge_bisect_2D(), FEM_MUtil::removeGhostElementRemote(), FEM_MUtil::removeGhostNodeRemote(), femMeshModify::removeIDXLRemote(), FEM_MUtil::removeNodeAll(), FEM_MUtil::removeNodeRemote(), renumberConn(), FEM_MUtil::Replace_node_local(), FEM_MUtil::residualLockTest(), femMeshModify::setFemMesh(), Bulk_Adapt::SetMeshSize(), FEM_Adapt_Algs::SetMeshSize(), sharedWith(), edge::split(), element::split(), FEM_MUtil::splitEntityAll(), FEM_MUtil::splitEntityRemote(), FEM_MUtil::splitEntitySharing(), splitter::splitter(), FEM_MUtil::StructureTest(), topModel_CreateNodeElemItr(), topNodeItr_Begin(), topNodeItr_IsValid(), topNodeItr_Next(), element::translateNodeIDs(), edge::translateSharedNodeIDs(), FEM_MUtil::unlockAll(), ParFUMShadowArray::unlockLocalNodes(), FEM_AdaptL::unlockNodes(), ParFUMShadowArray::unlockSharedIdxls(), BulkAdapt::update_node_coord(), FEM_MUtil::updateAttrs(), edge::updateCloud(), FEM_MUtil::UpdateGhostSend(), femMeshModify::updateIdxlList(), femMeshModify::updateNodeAttrs(), femMeshModify::verifyghostsend(), FEM_MUtil::verifyIdxlListRemote(), and FEM_lockN::verifyLock().

FEM_Entity_Types<FEM_Elem> FEM_Mesh::elem

The different element types in this mesh:.

Definition at line 1169 of file fem_mesh.h.

Referenced by splitter::aboutToCreate(), BulkAdapt::add_element(), splitter::addGhostElement(), FEM_MUtil::addGhostElementRemote(), splitter::addGhostInner(), splitter::addGhostPair(), addIDXLists(), splitter::addLayer(), splitter::addStencil(), FEM_MUtil::addToSharedList(), FEM_MUtil::AreaTest(), splitter::buildCommLists(), FEM_Ghost_Stencil::check(), check(), FEM_Sparse_Elem_Checker::check(), chkET(), femMeshModify::cleanupIDXL(), clearGhostElems(), FEM_Adapt_Algs::Coarsen(), splitter::consistencyCheck(), copyOldGlobalno(), copyShape(), createElemElemAdj(), splitter::createMesh(), createNodeElemAdj(), createNodeNodeAdj(), BulkAdapt::dumpConn(), e2e_getAll(), e2e_getIndex(), e2e_getNbr(), e2e_removeAll(), e2e_replace(), e2e_setAll(), e2e_setIndex(), e2n_getAll(), e2n_getIndex(), e2n_getNode(), e2n_removeAll(), e2n_replace(), e2n_setAll(), e2n_setIndex(), FEM_MUtil::eatIntoElement(), femMeshModify::eatIntoElement(), BulkAdapt::edge_bisect_2D(), BulkAdapt::edge_bisect_3D(), FEM_Adapt::edge_bisect_help(), FEM_AdaptL::edge_contraction_help(), FEM_Adapt::edge_flip_help(), FEM_MUtil::exists_in_IDXL(), FEM_ADAPT_SetElementSizeField(), FEM_ADAPT_SetElementsSizeField(), FEM_add_element(), FEM_add_element_local(), FEM_Add_ghost_stencil(), FEM_break_mesh(), FEM_Interpolate::FEM_InterpolateElementCopy(), FEM_master_parallel_part(), FEM_Mesh_assemble(), FEM_Mesh_broadcast(), FEM_MUtil::FEM_Print_e2e(), FEM_MUtil::FEM_Print_e2n(), FEM_Print_Mesh_Summary(), FEM_purge_element(), FEM_remove_element(), FEM_remove_element_local(), FEM_write_part2mesh(), Bulk_Adapt::findEdgeLengths(), ParFUMShadowArray::FindIdxlSide(), FEM_MUtil::getChunkNos(), getEntities(), getGlobalElem(), FEM_MUtil::getRemoteIdx(), globalElem2elType(), FEM_Adapt_Algs::GradateMesh(), BulkAdapt::handle_split_3D(), FEM_MUtil::IdxlListTest(), BulkAdapt::isLongest(), BulkAdapt::local_split_3D(), BulkAdapt::local_update_asterisk_3D(), FEM_lock::lock(), lookup(), FEM_MUtil::lookup_in_IDXL(), makeGhost(), makeGhosts(), mesh2graph(), mesh2graph_face(), meshElemItr_Begin(), meshElemItr_Next(), meshFacetItr_GetCurr(), n2e_add(), n2e_replace(), nElems(), BulkAdapt::one_side_split_2D(), MeshElem::operator+=(), femMeshModify::packElemData(), FEM_MUtil::packEntData(), Bulk_Adapt::ParFUM_GradateMesh(), Bulk_Adapt::ParFUM_SetReferenceMesh(), print(), pup(), FEM_Adapt_Algs::Refine(), Bulk_Adapt::Refine_h(), BulkAdapt::remote_edge_bisect_2D(), BulkAdapt::remote_edgeAdj_add(), BulkAdapt::remote_edgeAdj_replace(), FEM_MUtil::removeElemRemote(), FEM_MUtil::removeGhostElementRemote(), setAbsoluteGlobalno(), setAscendingGlobalno(), Bulk_Adapt::SetMeshSize(), FEM_Adapt_Algs::SetMeshSize(), FEM_Adapt_Algs::SetReferenceMesh(), FEM_Adapt_Algs::simple_coarsen(), FEM_Adapt_Algs::simple_refine(), splitter::splitter(), FEM_MUtil::StructureTest(), topElemItr_Begin(), topElemItr_Next(), topFacetItr_GetCurr(), BulkAdapt::update_element_conn(), BulkAdapt::update_local_edge_adj(), BulkAdapt::update_local_face_adj(), update_new_element_e2e(), FEM_MUtil::updateAttrs(), FEM_MUtil::verifyIdxlListRemote(), and splitter::~splitter().

FEM_Entity_Types<FEM_Sparse> FEM_Mesh::sparse

The different sparse types in this mesh:.

Definition at line 1172 of file fem_mesh.h.

Referenced by copyOldGlobalno(), copyShape(), FEM_Mesh_assemble(), getEntities(), lookup(), print(), pup(), splitter::separateSparse(), and setAscendingGlobalno().

FEM_Userdata_list FEM_Mesh::udata

The unassociated user data for this mesh:.

Definition at line 1175 of file fem_mesh.h.

Referenced by splitter::createMesh(), FEM_master_parallel_part(), FEM_Mesh_assemble(), FEM_slave_parallel_part(), and pup().

femMeshModify* FEM_Mesh::fmMM

Definition at line 1294 of file ParFUM_internals.h.

ParFUMShadowArray* FEM_Mesh::parfumSA

Definition at line 1295 of file ParFUM_internals.h.

Referenced by BulkAdapt::BulkAdapt(), Bulk_Adapt::Refine_h(), and setParfumSA().

bool FEM_Mesh::lastLayerSet

Definition at line 1296 of file ParFUM_internals.h.

FEM_ElemAdj_Layer* FEM_Mesh::lastElemAdjLayer

Definition at line 1297 of file ParFUM_internals.h.

FEM_Entity_Types<FEM_Elem> FEM_Mesh::elem

The different element types in this mesh:.

Definition at line 1309 of file ParFUM_internals.h.

FEM_Entity_Types<FEM_Sparse> FEM_Mesh::sparse

The different sparse types in this mesh:.

Definition at line 1312 of file ParFUM_internals.h.

std::set<std::pair<int,int> > FEM_Mesh::edgesOnBoundary

list of edges on the boundary(adjacent to at least one local node)

Definition at line 1499 of file ParFUM_internals.h.

std::set<int> FEM_Mesh::verticesOnBoundary

list of the nodes found in edgesOnBoundary

Definition at line 1502 of file ParFUM_internals.h.

std::set<int> FEM_Mesh::cornersOnBoundary

list of corners on the mesh.

These are nodes in edgesOnBoundary that have small angles between their adjacent boundary edges

Note:: the criterion angle is specified in the preprocessor define CORNER_ANGLE_CUTOFF in mesh_feature_detect.C

Definition at line 1507 of file ParFUM_internals.h.

The documentation for this class was generated from the following files:

libs/ck-libs/fem/fem_mesh.h
libs/ck-libs/ParFUM/ParFUM_internals.h
libs/ck-libs/fem/fem.C
libs/ck-libs/fem/fem_mesh.C
libs/ck-libs/fem/fem_mesh_adjacency.C
libs/ck-libs/ParFUM/mesh.C
libs/ck-libs/ParFUM/ParFUM.C

FEM_Mesh Class Reference [ParFUM Unstructured Mesh Framework]

Public Member Functions

Data Fields

Private Member Functions

Private Attributes

Detailed Description

Constructor & Destructor Documentation

Member Function Documentation

Field Documentation

FEM_Mesh Class Reference
[ParFUM Unstructured Mesh Framework]