libs/ck-libs/fem/fem.C File Reference

Go to the source code of this file.

Data Structures
class	FEM_Mesh_Partition_List
Enumerations
enum	{ FEM_globalID = 33 }
Functions
void	FEM_Abort (const char *msg)
void	FEM_Abort (const char *caller, const char *sprintf_msg, int int0, int int1, int int2)
CLINKAGE void	pupFEM_Chunk (pup_er cp)
CLINKAGE void	FEM_Init (FEM_Comm_t defaultComm)
	Initialize the FEM framework (must have called MPI_Init).
	FORTRAN_AS_C (FEM_INIT, FEM_Init, fem_init,(int *comm),(*comm)) void _registerfem(void)
CLINKAGE int	FEM_Mesh_allocate (void)
	mesh creation functions
	FORTRAN_AS_C_RETURN (int, FEM_MESH_ALLOCATE, FEM_Mesh_allocate, fem_mesh_allocate,(void),())
	Return a new'd copy of this class, by calling pup.
CLINKAGE int	FEM_Mesh_copy (int fem_mesh)
	build new mesh
	FORTRAN_AS_C_RETURN (int, FEM_MESH_COPY, FEM_Mesh_copy, fem_mesh_copy,(int *m),(*m)) CLINKAGE void FEM_Mesh_deallocate(int fem_mesh)
	FORTRAN_AS_C (FEM_MESH_DEALLOCATE, FEM_Mesh_deallocate, fem_mesh_deallocate,(int *m),(*m)) CLINKAGE int FEM_Mesh_read(const char *prefix
FEM_Partition &	FEM_curPartition (void)
static void	clearPartition (void)
static void	FEM_Mesh_partition (FEM_Mesh *src, int _nchunks, FEM_Mesh_Output *out)
CLINKAGE void	FEM_Mesh_partition (int fem_mesh, int nParts, int *destMeshes)
	FORTRAN_AS_C (FEM_MESH_PARTITION, FEM_Mesh_partition, fem_mesh_partition,(int *mesh, int *nParts, int *dest),(*mesh,*nParts, dest)) CLINKAGE int FEM_Mesh_recv(int fromRank
CLINKAGE int	FEM_Mesh_broadcast (int fem_mesh, int masterRank, FEM_Comm_t comm_context)
	FORTRAN_AS_C_RETURN (int, FEM_MESH_BROADCAST, FEM_Mesh_broadcast, fem_mesh_broadcast,(int *mesh, int *rank, int *comm),(*mesh,*rank,*comm)) CLINKAGE void FEM_Mesh_copy_globalno(int src_mesh
	n (n_)
	addNodes (addNodes_)
	ends (new int[n])
	adj (new int[2 *userEnds[n-1]])
CLINKAGE void	FEM_Add_ghost_stencil_type (int elType, int nElts, int addNodes, const int *ends, const int *adj2)
FLINKAGE void	FTN_NAME (FEM_ADD_GHOST_STENCIL_TYPE, fem_add_ghost_stencil_type)
int	globalElem2elType (const FEM_Mesh *m, int globalElem)
CLINKAGE void	FEM_Add_ghost_stencil (int nElts, int addNodes, const int *ends, const int *adj)
FLINKAGE void	FTN_NAME (FEM_ADD_GHOST_STENCIL, fem_add_ghost_stencil)
CLINKAGE void	FEM_Add_ghost_layer (int nodesPerTuple, int doAddNodes)
FLINKAGE void	FTN_NAME (FEM_ADD_GHOST_LAYER, fem_add_ghost_layer)
static void	add_ghost_elem (int elType, int tuplesPerElem, const int *elem2tuple, int idxBase)
CLINKAGE void	FEM_Add_ghost_elem (int elType, int tuplesPerElem, const int *elem2tuple)
FLINKAGE void	FTN_NAME (FEM_ADD_GHOST_ELEM, fem_add_ghost_elem)
CLINKAGE void	FEM_Update_ghost_field (int fid, int elType, void *v_data)
FLINKAGE void	FTN_NAME (FEM_UPDATE_GHOST_FIELD, fem_update_ghost_field)
CLINKAGE void	FEM_Exchange_ghost_lists (int elemType, int nIdx, const int *localIdx)
FLINKAGE void	FTN_NAME (FEM_EXCHANGE_GHOST_LISTS, fem_exchange_ghost_lists)
CLINKAGE int	FEM_Get_ghost_list_length (void)
FLINKAGE int	FTN_NAME (FEM_GET_GHOST_LIST_LENGTH, fem_get_ghost_list_length)
CLINKAGE void	FEM_Get_ghost_list (int *dest)
FLINKAGE void	FTN_NAME (FEM_GET_GHOST_LIST, fem_get_ghost_list)
static void	getRoccomPconn (IDXL_Side_t is, int bias, CkVec< int > &pconn, const int *paneFmChunk)
	Extract an IDXL_Side_t into Roccom format.
static CkVec< int >	getRoccomPconn (int fem_mesh, int *ghost_len, const int *paneFmChunk)
	Extract all FEM communication information into Roccom format.
CLINKAGE void	FEM_Get_roccom_pconn_size (int fem_mesh, int *total_len, int *ghost_len)
	FORTRAN_AS_C (FEM_GET_ROCCOM_PCONN_SIZE, FEM_Get_roccom_pconn_size, fem_get_roccom_pconn_size,(int *mesh, int *tl, int *gl),(*mesh, tl, gl)) CLINKAGE void FEM_Get_roccom_pconn(int fem_mesh
int	commState (int entityNo, const IDXL_Side &s)
CLINKAGE void	FEM_Make_node_globalno (int fem_mesh, FEM_Comm_t comm_context)
	Based on shared node communication list, compute FEM_NODE FEM_GLOBALNO and FEM_NODE_PRIMARY.
	FORTRAN_AS_C (FEM_MAKE_NODE_GLOBALNO, FEM_Make_node_globalno, fem_make_node_globalno,(int *mesh, int *comm),(*mesh,*comm)) class localToGlobal
CLINKAGE void	FEM_Add_elem2face_tuples (int fem_mesh, int elem_type, int nodesPerTuple, int tuplesPerElem, const int *elem2tuple)
Variables
int	femVersion = 1
static CmiNodeLock	femLock = 0
int	partNo
int	tag
const int *	paneFmChunk

---

Enumeration Type Documentation

anonymous enum

Enumerator:

FEM_globalID

Definition at line 34 of file fem.C.

---

Function Documentation

void FEM_Abort

(

const char *

msg

)

Definition at line 17 of file fem.C.

Referenced by splitter::addGhostPair(), FEM_Mesh_list::bad(), FEM_Sparse_Elem_Checker::check(), FEM_Elem_Conn_Checker::check(), checkIsSet(), splitter::consistencyCheck(), splitter::copySparseChunks(), FEM_Entity::create(), FEM_Abort(), FEM_Index_Check(), FEM_Is_NULL(), FEM_openMeshFile(), FORTRAN_AS_C(), FEM_chunk::get(), FEMchunk::get(), FEM_Mesh::lookup(), and type2base().

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void FEM_Abort	(	const char *	caller,
		const char *	sprintf_msg,
		int	int0,
		int	int1,
		int	int2
	)

Definition at line 20 of file fem.C.

CLINKAGE void pupFEM_Chunk

(

pup_er

cp

)

Definition at line 36 of file fem.C.

References c, FEM_globalID, PUP::er::isDeleting(), p, FEMchunk::pup(), TCHARM_Get_global(), and TCHARM_Set_global().

Referenced by FEM_Init(), and pupFEM_Chunk().

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void FEM_Init

(

FEM_Comm_t

defaultComm

)

Initialize the FEM framework (must have called MPI_Init).

Definition at line 53 of file fem.C.

Referenced by FTN_NAME().

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FORTRAN_AS_C	(	FEM_INIT	,
		FEM_Init	,
		fem_init	,
		(int *comm)	,
		*	comm
	)

Definition at line 62 of file fem.C.

int FEM_Mesh_allocate

(

void

)

mesh creation functions

Definition at line 81 of file fem.C.

Referenced by FTN_NAME().

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FORTRAN_AS_C_RETURN	(	int	,
		FEM_MESH_ALLOCATE	,
		FEM_Mesh_allocate	,
		fem_mesh_allocate	,
		(void)	,
		()
	)

Return a new'd copy of this class, by calling pup.

Definition at line 89 of file fem.C.

References buf, PUP::fromMemBuf(), len, PUP::size(), and PUP::toMemBuf().

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int FEM_Mesh_copy

(

int

fem_mesh

)

build new mesh

Definition at line 104 of file fem.C.

Referenced by FEM_master_parallel_part(), FEM_Mesh_partition(), and FEM_slave_parallel_part().

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FORTRAN_AS_C_RETURN	(	int	,
		FEM_MESH_COPY	,
		FEM_Mesh_copy	,
		fem_mesh_copy	,
		(int *m)	,
		*	m
	)

Definition at line 109 of file fem.C.

References c, caller, FEM_T_List< T >::destroy(), FEMchunk::get(), and FEMchunk::meshes.

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FORTRAN_AS_C	(	FEM_MESH_DEALLOCATE	,
		FEM_Mesh_deallocate	,
		fem_mesh_deallocate	,
		(int *m)	,
		*	m
	)			const

static void clearPartition

(

void

)

[static]

Definition at line 173 of file fem.C.

Referenced by FEM_Mesh_Parallel_broadcast(), and FEM_Mesh_partition().

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static void FEM_Mesh_partition	(	FEM_Mesh *	src,
		int	_nchunks,
		FEM_Mesh_Output *	out
	)			[static]

Definition at line 202 of file fem.C.

References clearPartition(), FEM_curPartition(), FEM_Mesh_split(), and FEM_Mesh::setAscendingGlobalno().

Referenced by FEM_Mesh_broadcast(), FEM_Mesh_partition(), FEM_Serial_split(), and FEM_Partition::getPartition().

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void FEM_Mesh_partition	(	int	fem_mesh,
		int	nParts,
		int *	destMeshes
	)

Definition at line 222 of file fem.C.

FORTRAN_AS_C	(	FEM_MESH_PARTITION	,
		FEM_Mesh_partition	,
		fem_mesh_partition	,
		(int *mesh, int *nParts, int *dest)	,
		*,*,	dest
	)

int FEM_Mesh_broadcast	(	int	fem_mesh,
		int	masterRank,
		FEM_Comm_t	comm_context
	)

Type Constraints

Definition at line 301 of file fem.C.

Referenced by FTN_NAME().

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FORTRAN_AS_C_RETURN	(	int	,
		FEM_MESH_BROADCAST	,
		FEM_Mesh_broadcast	,
		fem_mesh_broadcast	,
		(int *mesh, int *rank, int *comm)	,
		*,*,*	comm
	)

n

(

n_

)

addNodes

(

addNodes_

)

Referenced by FEM_Ghost_Layer::pup(), and FEM_Ghost_Stencil::wantNodes().

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ends

(

new

int[n]

)

Referenced by adj(), and FEM_Ghost_Stencil::getNeighbor().

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adj

(

new int]

[2 *userEnds[n-1]

)

Definition at line 871 of file fem.C.

References ends().

Referenced by adj(), copyOut(), fillAdjArray(), FTN_NAME(), FEM_Ghost_Stencil::getNeighbor(), printOut(), sortAdjArrays(), and BulkAdapt::update_local_edge_adj().

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void FEM_Add_ghost_stencil_type	(	int	elType,
		int	nElts,
		int	addNodes,
		const int *	ends,
		const int *	adj2
	)

Definition at line 892 of file fem.C.

Referenced by FEM_Add_ghost_stencil().

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FLINKAGE void FTN_NAME	(	FEM_ADD_GHOST_STENCIL_TYPE	,
		fem_add_ghost_stencil_type
	)

Definition at line 900 of file fem.C.

References FEM_Partition::addGhostStencil(), FEM_curPartition(), and PUP::s.

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int globalElem2elType	(	const FEM_Mesh *	m,
		int	globalElem
	)			[inline]

Definition at line 911 of file fem.C.

References FEM_Mesh::elem, FEM_Entity_Types< T >::has(), FEM_Entity_Types< T >::size(), and PUP::t.

Referenced by FEM_Add_ghost_stencil().

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void FEM_Add_ghost_stencil	(	int	nElts,
		int	addNodes,
		const int *	ends,
		const int *	adj
	)

Definition at line 929 of file fem.C.

Referenced by FTN_NAME().

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FLINKAGE void FTN_NAME	(	FEM_ADD_GHOST_STENCIL	,
		fem_add_ghost_stencil
	)

Definition at line 966 of file fem.C.

References adj(), and FEM_Add_ghost_stencil().

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void FEM_Add_ghost_layer	(	int	nodesPerTuple,
		int	doAddNodes
	)

Definition at line 978 of file fem.C.

Referenced by FTN_NAME(), and init().

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FLINKAGE void FTN_NAME	(	FEM_ADD_GHOST_LAYER	,
		fem_add_ghost_layer
	)

Definition at line 985 of file fem.C.

References FEM_Add_ghost_layer().

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static void add_ghost_elem	(	int	elType,
		int	tuplesPerElem,
		const int *	elem2tuple,
		int	idxBase
	)			[static]

Definition at line 989 of file fem.C.

References CkCopyArray(), FEM_Partition::curLayer(), FEM_Ghost_Layer::elem, FEM_curPartition(), and FEM_Ghost_Layer::nodesPerTuple.

Referenced by FEM_Add_ghost_elem(), and FTN_NAME().

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void FEM_Add_ghost_elem	(	int	elType,
		int	tuplesPerElem,
		const int *	elem2tuple
	)

Definition at line 1001 of file fem.C.

Referenced by init().

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FLINKAGE void FTN_NAME	(	FEM_ADD_GHOST_ELEM	,
		fem_add_ghost_elem
	)

Definition at line 1003 of file fem.C.

References add_ghost_elem().

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void FEM_Update_ghost_field	(	int	fid,
		int	elType,
		void *	v_data
	)

Definition at line 1007 of file fem.C.

Referenced by FEM_Adapt_Algs::FEM_mesh_smooth(), FEM_REFINE2D_Newmesh(), and FTN_NAME().

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FLINKAGE void FTN_NAME	(	FEM_UPDATE_GHOST_FIELD	,
		fem_update_ghost_field
	)

Definition at line 1022 of file fem.C.

References data, and FEM_Update_ghost_field().

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void FEM_Exchange_ghost_lists	(	int	elemType,
		int	nIdx,
		const int *	localIdx
	)

Definition at line 1101 of file fem.C.

FLINKAGE void FTN_NAME	(	FEM_EXCHANGE_GHOST_LISTS	,
		fem_exchange_ghost_lists
	)

Definition at line 1106 of file fem.C.

References FEMchunk::exchangeGhostLists(), and FEMchunk::get().

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int FEM_Get_ghost_list_length

(

void

)

Definition at line 1112 of file fem.C.

Referenced by FEM_Get_ghost_list(), and FTN_NAME().

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FLINKAGE int FTN_NAME	(	FEM_GET_GHOST_LIST_LENGTH	,
		fem_get_ghost_list_length
	)

Definition at line 1117 of file fem.C.

References FEM_Get_ghost_list_length().

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void FEM_Get_ghost_list

(

int *

dest

)

Definition at line 1120 of file fem.C.

FLINKAGE void FTN_NAME	(	FEM_GET_GHOST_LIST	,
		fem_get_ghost_list
	)

Definition at line 1128 of file fem.C.

References FEMchunk::emptyList(), FEM_Get_ghost_list_length(), FEMchunk::get(), FEMchunk::getList(), and CkVec< T >::getVec().

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static void getRoccomPconn	(	IDXL_Side_t	is,
		int	bias,
		CkVec< int > &	pconn,
		const int *	paneFmChunk
	)			[static]

Extract an IDXL_Side_t into Roccom format.

Definition at line 1142 of file fem.C.

References nn, and CkVec< T >::push_back().

Referenced by FEM_Get_roccom_pconn_size(), and getRoccomPconn().

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static CkVec<int> getRoccomPconn	(	int	fem_mesh,
		int *	ghost_len,
		const int *	paneFmChunk
	)			[static]

Extract all FEM communication information into Roccom format.

Definition at line 1159 of file fem.C.

References FEM_Comm_ghost(), FEM_Comm_shared(), FEM_Mesh_get_entities(), FEM_Mesh_get_length(), getRoccomPconn(), IDXL_Create(), and CkVec< T >::size().

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void FEM_Get_roccom_pconn_size	(	int	fem_mesh,
		int *	total_len,
		int *	ghost_len
	)

Definition at line 1199 of file fem.C.

FORTRAN_AS_C	(	FEM_GET_ROCCOM_PCONN_SIZE	,
		FEM_Get_roccom_pconn_size	,
		fem_get_roccom_pconn_size	,
		(int *mesh, int *tl, int *gl)	,
		*,,	gl
	)

int commState	(	int	entityNo,
		const IDXL_Side &	s
	)

Type Constraints

Definition at line 1252 of file fem.C.

References FEM_My_partition(), IDXL_Side::getRec(), and r.

Referenced by FEM_Make_node_globalno().

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void FEM_Make_node_globalno	(	int	fem_mesh,
		FEM_Comm_t	comm_context
	)

Based on shared node communication list, compute FEM_NODE FEM_GLOBALNO and FEM_NODE_PRIMARY.

Based on shared node communication list, compute FEM_NODE FEM_GLOBALNO and FEM_NODE_PRIMARY.

Definition at line 1271 of file fem.C.

FORTRAN_AS_C	(	FEM_MAKE_NODE_GLOBALNO	,
		FEM_Make_node_globalno	,
		fem_make_node_globalno	,
		(int *mesh, int *comm)	,
		*,*	comm
	)

Definition at line 1324 of file fem.C.

References FEM_Entity::getGlobalno(), and PUP::l.

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void FEM_Add_elem2face_tuples	(	int	fem_mesh,
		int	elem_type,
		int	nodesPerTuple,
		int	tuplesPerElem,
		const int *	elem2tuple
	)

Definition at line 1422 of file fem.C.

Referenced by FEM_ADAPT_Init().

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---

Variable Documentation

int femVersion = 1

Definition at line 10 of file fem.C.

Referenced by allocated(), FEM_Entity::FEM_Entity(), FEM_Entity::pup(), FEM_Attribute::pup(), FEM_Attribute::pupSingle(), read_version(), FEM_Attribute::register_data(), FEM_Attribute::set(), FEM_Attribute::tryAllocate(), and write_version().

CmiNodeLock femLock = 0 [static]

Definition at line 15 of file fem.C.

Referenced by FEM_Init().

int partNo

Definition at line 126 of file fem.C.

int tag

Definition at line 240 of file fem.C.

const int* paneFmChunk

Definition at line 1208 of file fem.C.